Upgrade¶
If you activate the pipeline via ngs_mapper/setup¶
- Completely remove the existing ngs_mapper directory.
- Then follow Install
If you installed using setup.py¶
First fetch any possible updates
cd ~/ngs_mapper; git fetchThen check if you need to update
git status | grep -q 'Your branch is behind' && echo 'You need to update' || echo 'You are up-to-date'If it returns You are up-to-date you are done
Update(pull new code)
git pullGo into your ngs_mapper directory and rerun the setup script
python setup.py install